While going through the beginnings and endings of the final chapters, though, I find another missing passage at the beginning of Section 20:
RuthI would be far from lessening the awe of the judgements of God and the reverence to His providence which ought always to be on our minds on such occasions as these. Doubtless the visitation itself is a stroke from Heaven upon a city, or country, or nation where it falls; a messenger of His vengeance, and a loud call to that nation or country or city to humiliation and repentance, according to that of the prophet Jeremiah (xviii. 7, 8): 'At what instant I shall speak concerning a nation, and concerning a kingdom, to pluck up, and to pull down, and to destroy it; if that nation against whom I have pronounced turn from their evil, I will repent of the evil that I thought to do unto them.' Now to prompt due impressions of the awe of God on the minds of men on such occasions, and not to lessen them, it is that I have left those minutes upon record.
I say, therefore, I reflect upon no man for putting the reason of those things upon the immediate hand of God, and the appointment and direction of His providence; nay, on the contrary, there were many wonderful deliverances of persons from infection, and deliverances of persons when infected, which intimate singular and remarkable providence in the particular instances to which they refer; and I esteem my own deliverance to be one next to miraculous, and do record it with thankfulness.
But when I am speaking of the plague as a distemper arising from natural causes, we must consider it as it was really propagated by natural means; nor is it at all the less a judgement for its being under the conduct of human causes and effects; for, as the Divine Power has formed the whole scheme of nature and maintains nature in its course, so the same Power thinks fit to let His own actings with men, whether of mercy or judgement, to go on in the ordinary course of natural causes; and He is pleased to act by those natural causes as the ordinary means, excepting and reserving to Himself nevertheless a power to act in a supernatural way when He sees occasion. Now 'tis evident that in the case of an infection there is no apparent extraordinary occasion for supernatural operation, but the ordinary course of things appears sufficiently armed, and made capable of all the effects that Heaven usually directs by a contagion. Among these causes and effects, this of the secret conveyance of infection, imperceptible and unavoidable, is more than sufficient to execute the fierceness of Divine vengeance, without putting it upon supernaturals and miracle.